All probes

ML010 : GCB (Glucocerebrosidase) Inhibitor

ML010

ML010

Target Name

Glucocerebrosidase

Target Alias

GCB

Target Class

Hydrolase

Mechanism of Action

Inhibitor of GCB

Biological / Disease Relevance

Gaucher disease

In Vitro Activity
IC50
0.33 uM
In Vitro Activity
Ki
0.32 uM
Inactive Control
Available

Target Information

Beta-glucocerebrosidase catalyzes the hydrolysis of beta-glucocerebroside to glucose and ceramide. The inherited deficiency of beta-glucocerebrosidase results in Gaucher disease, which is characterized by a wide variety of symptoms including hepatosplenomegaly, anemia, thrombocytopenia, bony lesions and bone marrow infiltration with characteristic storage cells, known as Gaucher cells. It is believed that improper folding and trafficking of beta-glucocerebrosidase may contribute to the phenotypes observed. It is suggested that the pharmacological chaperone stabilizes the glucocerebrosidase conformation to prevent misfolding and premature degradation, and helps its trafficking from the ER to its functional site, the lysosome. Therefore, a small molecule beta-glucocerebrosidase inhibitor used as a pharmacological chaperone offers a therapeutic alternative. Not only could it bind to the enzyme to stabilize the conformation and help to improve protein trafficking, but it could also be designed to cross the blood-brain barrier to be used as a potential therapy for neuronopathic Gaucher disease, where currently no efficacious therapy is available.

Properties

ML010

NCGC00166330

Physical & chemical properties
Molecular Weight 372.5 g/mol
Molecular Formula C19H28N6O2
cLogP 302
PSA 95.4
Storage
Solubility
CAS Number

SMILES:
CC(C)(OC1=C(NC2=NC(N3CCCC3)=NC(NCCO)=N2)C=CC=C1)C

InChI:
InChI=1S/C19H28N6O2/c1-19(2,3)27-15-9-5-4-8-14(15)21-17-22-16(20-10-13-26)23-18(24-17)25-11-6-7-12-25/h4-5,8-9,26H,6-7,10-13H2,1-3H3,(H2,20,21,22,23,24)

InChIKey:
YLYZGVPSUIZOCY-UHFFFAOYSA-N

Activity

Summary activity statement /

ML010 (SID 29218088, SID 49645689, CID 17757274, NCGC00166330, triazine) is observed to be a potent and selective inhibitor of Glucocerebrosidase (GC) Chemotype 3 with an IC50 of 0.33 uM. The selectivity of probe ML010 was measured in 3 other hydrolases including alpha-glucosidase, alpha-galactosidase, and beta-N-acetyldglucosaminidase (HEX). These enzymes are all lipid hydrolases and shared the same metabolic pathways as GC. ML010 is observed to be inactive against these 3 bioassays at concentrations up to 77 uM demonstrating high selectivity to GC. ML010 has been screened against 430 PubChem bioassays and is observed to be active in 5 assays.

In vitro assay - Selectivity

ML010 iminosugar nonyl-DNJ

glucocerebrosidase

0.33 uM 0.103 uM

alpha-glucosidase

Inactive 0.050 uM

alpha-galactosidase

Inactive Inactive

beta-hexosaminidase

Inactive Inactive

Summary /

Comparative data showing probe specificity for target: The selectivity of ML010 was measured in three other hydrolases including α-glucosidase, α-galactosidase, and β-N-acetylglucosaminidase (β-N-acetylhexosaminidase, HEX). Deficiencies in α-glucosidase, α-galactosidase and β-hexosaminidase result in Pompe disease, Fabry disease and Tay-Sachs or Sandhoff disease, respectively, all genetic disorders of lysosomal lipid metabolism like Gaucher disease (Vellodi A, 2005). Substrates of these three enzymes labeled with the blue fluorophore 4-methylumbelliferone were used with a GC enzyme assay using the substrate 4-methylumbelliferyl-β-D-glucopyranoside (4MU-β−Glc) as control. These four enzyme assays were performed in parallel with the 1536-well plates (Urban DJ, 2008). Results showed that ML010 (SID 847960), did not inhibit the activities of α-glucosidase, α-galactosidase, or β-hexosaminidase at concentrations up to 77 μM, demonstrating high selectivity to GC. In contrast, the iminosugar nonyl-DNJ was found to inhibit both GC and α-glucosidase, with IC50 values of 0.103 and 0.050 μM, respectively. The IC50 values of the compounds in the GC enzyme assay using the blue fluorogenic substrate 4MU-β−Glc were like those using fluorogenic substrate Res-β-Glc.

In vitro assay - Mechanism of action

Summary /

Mechanism of inhibition of probe: The effect of GC inhibitor SID 847960 (NCGC00029010 – precursor to SID 49645689) on enzyme kinetics was studied in the enzyme assay to identify the mechanism of inhibition. SID 847960 exhibited mixed inhibition.

Cellular activity - Primary cell (Gaucher fibroblast) assay

Summary /

Increase of glucocerebrosidase activity in Gaucher fibroblasts: The primary cells from Gaucher patients with N370S mutations were treated with 4.4, 13.3 and 40 uM of SID 847960 for 2 days in comparison with the wt. cells. A treatment of 40uM inhibitors days resulted in a 40-90% increase of the mutant enzyme (N370S) activity in fibroblasts from Gaucher patients while the increase of normal enzyme activity was much smaller. This result indicates that these inhibitors may stabilize the mutant enzyme protein, help its proper folding/trafficking and thus increase its activity in the cell-based assay.