ML217 : Cruzain (T. cruzi Cruzipain) Inhibitor

ML217
Target Name
T. cruzi Cruzipain
Target Alias
Cruzain
Target Class
Cysteine Endopeptidase
Mechanism of Action
Inhibitor of Cruzain
Biological / Disease Relevance
Chagas Disease
In vitro activity
Cruzain bioassay (IC50)Cellular activity
T. Cruzi Growth Inhibition (IC50)Target Information
Cruzain is a key cysteine protease that is essential for the survival and replication of Trypanosoma cruzi (T. cruzi), a protozoan parasite that is the causative agent of Chagas disease. Inhibition of cruzain has been validated as a viable strategy for the development of small molecule therapeutics for Chagas disease. To date, reports of small molecule cruzain inhibitors have been primarily of those which contain an electrophilic warhead and act by irreversible, covalent modification of the enzyme. As such, we sought to discover novel reversible covalent inhibitors of cruzain using a combination of docking, co-crystallization and highthroughput screening. In this report, we describe the discovery of ML217, which exhibits trypanocidal activity against the T. Cruzi parasite, while having minimal toxicity to the host cell. Moreover, ML217 represents the first reversible non-covalent inhibitor of cruzain to demonstrate efficacy in a Chagas disease mouse model.
Properties

ML217
NCGC00114713
Physical & chemical properties | ||||
---|---|---|---|---|
Molecular Weight | 405.5 g/mol | |||
Molecular Formula | C25H31N3O2 | |||
cLogP | 5.1 | |||
PSA | 56.2 Ų | |||
Storage | ||||
Solubility | ||||
CAS Number |
SMILES:
CC1=CC=C(C=C1)OCCN2C(CCNC(C3CCCCC3)=O)=NC4=CC=CC=C24
InChI:
1S/C25H31N3O2/c1-19-11-13-21(14-12-19)30-18-17-28-23-10-6-5-9-22(23)27-24(28)15-16-26-25(29)20-7-3-2-4-8-20/h5-6,9-14,20H,2-4,7-8,15-18H2,1H3,(H,26,29)
InChIKey:
YMBZFKXYDBFYTC-UHFFFAOYSA-N
Activity
Summary activity statement /
Researchers in the Chagas disease field will find utility in ML217 (SID 104219746; CID 3159995). due to its efficacy and its non-covalent, reversible mechanism of action. In addition to its T. Cruzi growth inhibition, researchers in related parasitic-based neglected tropical diseases may find ML217 to have a common mechanism and potential anti-parasitic activity. Lastly, due to its potential for medicinal chemistry optimization, ML217 is a suitable starting point for small molecule-based therapeutic development for Chagas disease.
In vitro activity - Selectivity and Cytotoxicity Assay
Bioassay | ML217 (IC50) |
---|---|
Cruzain |
2 uM |
Papain (Anti-Target) |
>57 uM |
NIH/3T3 cells (Cytotoxicity) |
Not toxic |
Summary /
ML217 shows activity against cruzain, T. Cruzi parasite killing, is non-toxic to the host cell (NIH/3T3 cells), and shows significant reduction of parasite burden in Chagas disease mouse models.

Figure 1. T. Cruzi growth inhibition assay for ML217. Solid line represents parasite killing; IC50 values were determined as the concentration at which the activity (Abs590) of β-gal was half that in the absence of compound. Dotted line represents cytotoxicity against the host cell (NIH/3T3).
In vivo activity - T. cruzi growth inhibition assay
Summary /
Having an acceptable EC50/TC50 ratio prompted us to investigate these compounds in the T. Cruzi in vivo mouse model. This in vivo model utilizes bioluminescent T. Cruzi, in which the firefly luciferase enzyme is stably expressed within the parasite.xii This method allows for rapid analysis of potential drugs for the treatment of Chagas disease (Figure 2A). The compounds were dosed at 10 mg/kg, once/day (SID) and monitored compared to a control. Treatment began 7 days post infection and the parasite burden was analyzed at day 12 and day 19 (Figure 2B). We found a significant reduction of parasite burden at day 19, compared to the control and after 5 days treatment. These results are significant as other reported in vivo T. Cruzi parasite killing assays were conducted with higher doses (20-100 mg/kg) and more frequent treatment regiments (BID). These results suggest that over a longer treatment time, and using comparable dosing, these compounds would have an even more pronounced effect.

Figure 2. A. Whole-body imaging of mice infected with bioluminescent T. Cruzi parasite, both the control (no treatment) and those treated with benznidazole at 30 mg/kg. B. Ratio of parasite burden after 12 days of treatment for ML217 and analog compound 16. Treatment starts 7 days post infection. Compounds were dosed at 10 mpk SID.
In vitro activity - ADME Profiling
Compound | aq. Kinetic sol. (PBS @ pH7.4) | Caco-2 (Papp 10-6m/s @ pH7.4) | Efflux ratio (B→A)/(A→B) | mouse Liver microsome stability (T1/2) | PBS-pH7.4 Stability (remaining after 48hrs) | Mouse plasma stability (remaining after 48 hrs) |
---|---|---|---|---|---|---|
ML217 |
5.0 | 4.1 | 1.1 | <10 min | 100% | 95% |
Summary /
ML217 has only limited aqueous solubility (5 μM), and thus could have poor absorption and oral bioavailability. As such, we are encouraged by the improved solubility of subsequent compounds, which have much improved solubility in PBS buffer (pH 7.4) of >150 μM while maintaining comparable potency of ML217. These compounds have not yet been tested in the T. Cruzi assay or the Chagas disease mouse model, but the preliminary results suggest that the solubility liability has already been addressed.
References
- PubChem link: Inhibitors of Cruzain: Trypanosoma Cruzi Growth Inhibition Assay
- Luci D, Lea W, Ferreira R, et al. Reversible and non-covalent benzimidazole-based in vivo lead for Chagas disease. 2011 Apr 15 [Updated 2013 Feb 28]. In: Probe Reports from the NIH Molecular Libraries Program [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK133417/